Search Results
  • HOME
  • ABOUT
  • PEOPLE
  • PROJECTS
  • PUBLICATIONS
  • CONTACT
  • USF USE

Epigenetics and Functional Genomics Laboratory

Taşkesen, M.*, Collin, G.B.*, Evsikov, A.V.*, Güzel, A., Özgül, R.K., Marshall, J.D., and Naggert, J.K. (2012).  Novel Alu retrotransposon insertion leading to Alström syndrome. Human Genetics 131: 407-413.

Bult, C.J., Drabkin, H., Evsikov, A., Natale, D. Arighi, C., Roberts, N., Ruttenberg, A., D'Eustachio, P., Smith, B., Blake, J.A., and Wu, C. (2011)  The representation of protein complexes in the Protein Ontology (PRO). BMC Bioinformatics 12: 371.

Staier F., Eipel H., Matula P., Evsikov A.V., Kozubek M., Cremer C., Hausmann M. (2011).  Micro Axial Tomography: a miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy. Review of Scientific Instruments 82: 093701.

Ratzan, W.J., Evsikov, A.V., Okamura, Y., and Jaffe, L.A. (2011).  Voltage sensitive phosphoinositide phosphatases of Xenopus: their tissue distribution and voltage dependence. Journal of Cellular Physiology 226: 2740–2746.

Natale, D.A., Arighi, C.N., Barker, W.C., Blake, J.A., Bult, C.J., Caudy, M., Drabkin, H.J., D'Eustachio, P., Evsikov, A.V., Huang, H., Nchoutmboube, J., Roberts, N.V., Smith, B., Zhang, J., and Wu, C.H. (2011).  The Protein Ontology (PRO): A Structured Representation of Protein Forms and Complexes. Nucleic Acids Research 39:  D539-D545.

Bui, L.C., Evsikov, A.V., Khan, D.R., Archilla, C., Peynot, N., Henaut, A., Le Bourhis, D., Vignon, X., Renard, J.P., and Duranthon, V. (2009).  Retrotransposon expression as a defining event of genome reprogramming in fertilized and cloned bovine embryos. Reproduction 138: 289-299.

Evsikov, A.V., Dolan, M., Genrich, M., Patek, E., and Bult, C.J. (2009).  MouseCyc: A biochemical pathways database for the laboratory mouse. Genome Biology 10: R84.

Evsikov, A.V., and Marín de Evsikova, C. (2009).  Evolutionary origin and phylogenetic analysis of the novel oocyte-specific eukaryotic translation initiation factor 4E in Tetrapoda. Development, Genes and Evolution 219: 111-118.

11.  Evsikov, A.V., and Marín de Evsikova, C. (2009).  Regulation of gene expression during the oocyte-to-embryo transition in mammals. Molecular Reproduction and Development 76: 805-818.

12.  De Vries, W.N., Evsikov, A.V., Jalbert, L., Anderson, C.P., Graber, J., Knowles, B.B., and Solter, D. (2008).  Reprogramming and differentiation in mammals: motifs and mechanisms. Cold Spring Harbor Symposia on Quantitative Biology: Control & Regulation of Stem Cells 73: 33-38.

13.  Evsikov, A.V., Graber, J.H., Brockman, J.M., Hampl, A., Holbrook, A.E., Singh, P., Eppig, J.J., Solter, D., and Knowles, B.B. (2006).  Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully-grown oocyte to embryo. Genes and Development 20: 2713-2727.

14.  Peaston, A.E.*, Evsikov, A.V.*, Graber, J.H., de Vries, W.N., Holbrook, A.E., Solter, D., and Knowles, B.B. (2004).  Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Developmental Cell 7: 597-606.

15.  Evsikov, A.V., de Vries, W.N., Peaston, A., Radford, E.E., Fancher, K.S., Chen, F.H., Blake, J.A., Bult, C.J., Latham, K.E., Solter, D., and Knowles, B.B. (2004).  Systems biology of the 2-cell mouse embryo. Cytogenetics and Genome Research 105: 240-250.

16.  Mehlmann, L.M., Saeki, Y., Tanaka, S., Brennan, T.J., Evsikov, A.V., Pendola, F.L., Knowles, B.B., Eppig, J.J., and Jaffe, L.A. (2004).  The Gs-linked receptor GPR3 maintains meiotic arrest in mammalian oocytes. Science 306: 1947-1950.

17.  De Vries, W.N., Evsikov, A.V., Haac, B.E., Fancher, K.S., Holbrook, A.E., Kemler, R., Solter, D., and Knowles, B.B. (2004).  Maternal β-catenin and E-cadherin in mouse development. Development 131: 4435-4445.

18.  Evsikov, A.V., and Solter, D. (2003).  Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "A stem cell molecular signature". Science 302: 393.

19.  Solter, D., Hiiragi, T., Evsikov, A.V., Moyer, J., de Vries, W.N., Peaston, A.E., and Knowles, B.B. (2004).  Epigenetic mechanisms in early mammalian development. Cold Spring Harbor Symposia on Quantitative Biology: Epigenetics 69: 11-17.

20.  Knowles, B.B., Evsikov, A.V., de Vries, W.N., Peaston, A.E., and Solter, D. (2003).  Molecular control of the oocyte to embryo transition. Philosophical Transactions of the Royal Society B: Biological Sciences 358: 1381-1387.

22.  Solter, D., deVries, W.N., Peaston, A., Evsikov, A., and Knowles, B.B. (2002).  Fertilization and activation of the embryonic genome. In: Mouse Development: Morphogenesis and Organogenesis, Tamm, P., and Rossant, J., eds. New York: Academic Press. P. 5-19.

23.  Evsikov, A.V. (2000).  Mechanisms of regulation of early embryogenesis. Russian Journal of Developmental Biology 31: 142-153.

24.  Evsikov, A.V., and Solomko, A.P. (1999).  The levels and patterns of translation in preimplantation mouse embryos with repressed cytokinesis. Russian Journal of Developmental Biology 30: 83-88.

25.  Evsikov, A.V., and Solomko, A.P. (1998).  Changes in the cavitation start time in chimeric CB6F1↔BALB/c embryos. Cytology and Genetics 32: 74-77.

26.  Evsikov, A. V. (1997).  Regulatory mechanisms of mouse preimplantation development. Biopolimery i Kletka 13: 93-99. In Russian.

27.  Evsikov, A.V., and Evsikov, S.V. (1995).  Studies of the first and second polar bodies in mouse oogenesis. Russian Journal of Developmental Biology 26: 159-162. In English.

28.  Evsikov, S.V., and Evsikov, A.V. (1994).  Preimplantation development of manipulated mouse zygotes fused with the second polar bodies: a cytogenetic study. International Journal of Developmental Biology 38: 725-730.

Bernhardt, M.L., Lowther, K.M., Padilla-Banks, E., McDonough, C.E., Lee, K.N., Evsikov, A.V., Uliasz, T.F., Chidiac, P., Williams, C.J., and Mehlmann, L.M. (2015). Regulator of G-protein signaling 2 (RGS2) suppresses premature calcium release in mouse eggs. Development 142: 2633-2640.

Taşkesen, M.*, Collin, G.B.*, Evsikov, A.V.*, Güzel, A., Özgül, R.K., Marshall, J.D., and Naggert, J.K. (2012).  Novel Alu retrotransposon insertion leading to Alström syndrome. Human Genetics 131: 407-413.

Bult, C.J., Drabkin, H., Evsikov, A., Natale, D. Arighi, C., Roberts, N., Ruttenberg, A., D'Eustachio, P., Smith, B., Blake, J.A., and Wu, C. (2011).  The representation of protein complexes in the Protein Ontology (PRO). BMC Bioinformatics 12: 371.

Won, J., Marín de Evsikova, C., Smith, R., Hicks, W.L., Edwards, M.E., Tiansen, L., Naggert, J.K., and Nishina, P.M. (2011). NPHP4 is necessary for normal photoreceptor ribbon synapse and outer segment formation and for sperm development. Human Molecular Genetics 20: 482-496.

Staier F., Eipel H., Matula P., Evsikov A.V., Kozubek M., Cremer C., Hausmann M. (2011).  Micro Axial Tomography: a miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy. Review of Scientific Instruments 82: 093701.

Ratzan, W.J., Evsikov, A.V., Okamura, Y., and Jaffe, L.A. (2011).  Voltage sensitive phosphoinositide phosphatases of Xenopus: their tissue distribution and voltage dependence. Journal of Cellular Physiology 226: 2740–2746.

Natale, D.A., Arighi, C.N., Barker, W.C., Blake, J.A., Bult, C.J., Caudy, M., Drabkin, H.J., D'Eustachio, P., Evsikov, A.V., Huang, H., Nchoutmboube, J., Roberts, N.V., Smith, B., Zhang, J., and Wu, C.H. (2011).  The Protein Ontology (PRO): a structured representation of protein forms and complexes. Nucleic Acids Research 39: D539-D545.

DeMambro, V.E., Maynard J.A., Kawai, M., Marín de Evsikova, C., Johnson, K.R., Canalis, E., Beamer, W.G., Rosen, C.J., and Donahue, L.R. (2010). A novel spontaneous mutation of, Irs1 in mice results in hyperinsulinemia, with reduced growth, bone mass, and adipogenesis. Journal of Endocrinology 204: 241-253.

Edwards, M.E., Marín de Evsikova, C., Gifford, E., Wu, J., Hicks, W.L., Whiting, C., Varvel, N.H., Lamb, B.T., Naggert, J.K., Nishina, P.M., and Peachey, N.S. (2010). Photoreceptor degeneration, azoospermia, leukoencephalopathy and abnormal retinal pigment epithelial cell function in mice expressing an early stop mutation in CLCN2. Investigative Ophthalmology and Visual Science 51: 3264-3272.

Bui, L.C., Evsikov, A.V., Khan, D.R., Archilla, C., Peynot, N., Henaut, A., Le Bourhis, D., Vignon, X., Renard, J.P., and Duranthon, V. (2009).  Retrotransposon expression as a defining event of genome reprogramming in fertilized and cloned bovine embryos. Reproduction 138: 289-299.

Evsikov, A.V., Dolan, M., Genrich, M., Patek, E., and Bult, C.J. (2009).  MouseCyc: A biochemical pathways database for the laboratory mouse. Genome Biology 10: R84.

Matsumura K, Kano K, Marín de Evsikova C, Young J, Nishina PM, Naggert JK, Naito K. (2009). Transcriptome analysis reveals an unexpected role of a collagen tyrosine kinase receptor gene as a regulator of ovarian function. Physiological Genomics 39:120-129

Evsikov, A.V., and Marín de Evsikova, C. (2009).  Evolutionary origin and phylogenetic analysis of the novel oocyte-specific eukaryotic translation initiation factor 4E in Tetrapoda. Development, Genes and Evolution 219: 111-118.

Evsikov, A.V., and Marín de Evsikova, C. (2009).  Regulation of gene expression during the oocyte-to-embryo transition in mammals. Molecular Reproduction and Development 76: 805-818.

De Vries, W.N., Evsikov, A.V., Jalbert, L., Anderson, C.P., Graber, J., Knowles, B.B., and Solter, D. (2008).  Reprogramming and differentiation in mammals: motifs and mechanisms. Cold Spring Harbor Symposia on Quantitative Biology: Control & Regulation of Stem Cells 73: 33-38.

Evsikov, A.V., Graber, J.H., Brockman, J.M., Hampl, A., Holbrook, A.E., Singh, P., Eppig, J.J., Solter, D., and Knowles, B.B. (2006).  Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully-grown oocyte to embryo. Genes and Development 20: 2713-2727.

Peaston, A.E.*, Evsikov, A.V.*, Graber, J.H., de Vries, W.N., Holbrook, A.E., Solter, D., and Knowles, B.B. (2004).  Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Developmental Cell 7: 597-606.

Evsikov, A.V., de Vries, W.N., Peaston, A., Radford, E.E., Fancher, K.S., Chen, F.H., Blake, J.A., Bult, C.J., Latham, K.E., Solter, D., and Knowles, B.B. (2004).  Systems biology of the 2-cell mouse embryo. Cytogenetics and Genome Research 105: 240-250.

Mehlmann, L.M., Saeki, Y., Tanaka, S., Brennan, T.J., Evsikov, A.V., Pendola, F.L., Knowles, B.B., Eppig, J.J., and Jaffe, L.A. (2004).  The Gs-linked receptor GPR3 maintains meiotic arrest in mammalian oocytes. Science 306: 1947-1950.

De Vries, W.N., Evsikov, A.V., Haac, B.E., Fancher, K.S., Holbrook, A.E., Kemler, R., Solter, D., and Knowles, B.B. (2004).  Maternal β-catenin and E-cadherin in mouse development. Development 131: 4435-4445.

Evsikov, A.V., and Solter, D. (2003).  Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "A stem cell molecular signature". Science 302: 393.

Solter, D., Hiiragi, T., Evsikov, A.V., Moyer, J., de Vries, W.N., Peaston, A.E., and Knowles, B.B. (2004).  Epigenetic mechanisms in early mammalian development. Cold Spring Harbor Symposia on Quantitative Biology: Epigenetics 69: 11-17.

Knowles, B.B., Evsikov, A.V., de Vries, W.N., Peaston, A.E., and Solter, D. (2003).  Molecular control of the oocyte to embryo transition. Philosophical Transactions of the Royal Society B: Biological Sciences 358: 1381-1387.

Evsikov, A.V. (2000).  Mechanisms of regulation of early embryogenesis. Russian Journal of Developmental Biology 31: 142-153.

Evsikov, A.V., and Solomko, A.P. (1999).  The levels and patterns of translation in preimplantation mouse embryos with repressed cytokinesis. Russian Journal of Developmental Biology 30: 83-88.

Evsikov, A.V., and Solomko, A.P. (1998).  Changes in the cavitation start time in chimeric embryos CB6F1↔BALB/c. Cytology and Genetics 32: 74-77.

Evsikov, A.V., and Evsikov, S.V. (1995).  Studies of the first and second polar bodies in mouse oogenesis. Russian Journal of Developmental Biology 26: 159-162.

Evsikov, S.V., and Evsikov, A.V. (1994).  Preimplantation development of manipulated mouse zygotes fused with the second polar bodies: a cytogenetic study. International Journal of Developmental Biology 38: 725-730.